Signature	SharedGeneNum	SharedGenes	AvgPval	BreastC_M1 Chr9q31-34_UniqueNum	BreastC_M1 Chr9q31-34_pVal	BreastC_M1 Chr9q31-34_Unique	ColonC_M13 Chr9_UniqueNum	ColonC_M13 Chr9_pVal	ColonC_M13 Chr9_Unique
Chiche(PMID: 24644022)-2014_M5.3	3	C9ORF78|DENND1A|UBAC1	0.000432015374484	5	4.63577348691e-05	C12ORF10|PA2G4|PCBP2|WDR45|ZMAT2	4	0.000817673014099	C9ORF40|ISCA1|PIP5K1B|UBQLN1
Dystroglycanopathy	3	DPM2|FKTN|POMT1	0.00042849277998	0	0.000784443545015		1	7.2542014945e-05	DPM3
GSE15330_MEGAKARYOCYTE_ERYTHROID_VS_GRANULOCYTE_MONOCYTE_PROGENITOR_IKAROS_KO_UP	6	ARPC5L|GTF3C4|GTF3C5|NUP188|SURF2|UBAC1	0.000242435318905	4	0.000483842679749	BNIP1|PFDN1|PTPA|PXMP2	9	1.02795806169e-06	ANP32B|FANCG|FMC1|FXN|MRPL50|PRADC1|RPP25L|SPTLC1|XPO1
GSE17721_PAM3CSK4_VS_CPG_8H_BMDC_UP	7	ASB6|C9ORF16|GLE1|GTF3C5|MRPL41|NDUFA8|WDR5	0.000531584357664	3	0.000525197973457	BNIP1|PRR13|TMEM141	4	0.000537970741871	CARMIL1|KCNJ2|PUM3|SYK
GSE17721_POLYIC_VS_GARDIQUIMOD_8H_BMDC_DN	5	ELP1|MRPS2|NELFB|PSMB7|SDCCAG3	0.000310592753172	5	0.000525197973457	B4GALT7|KIF13A|ORMDL2|SLC35A4|SPRYD4	7	9.59875328866e-05	ABL1|CKS2|FAM122A|NCBP1|PDCL|TESK1|UBQLN1
GSE22935_WT_VS_MYD88_KO_MACROPHAGE_24H_MBOVIS_BCG_STIM_UP	6	ASB6|MRRF|RABL6|RNF20|TOR1A|UBAC1	0.000531417227431	4	0.000569442274819	ATOX1|LMAN2|NDUFA4|SLC25A3	5	0.000493392180043	CARMIL1|GRHPR|NFX1|POLE3|SEC61B
Human Breast_Dairkee04_479genes (15260889-TableS2a)	14	DPM2|GTF3C4|MRPL41|MRPS2|ODF2|PAXX|PMPCA|PPP6C|PSMD5|RABL6|SSNA1|WDR5|WDR34|ZDHHC12	2.22393626357e-07	6	4.44603156686e-07	CS|EPB41L4B|NDUFA10|PA2G4|PXMP2|RPA3	13	1.84096027027e-10	BARD1|CIZ1|CKS2|CTNNAL1|HIST3H2A|MELK|PHF2|POLE3|RAD23B|SLC25A25|STOML2|TMEM38B|TPRN
Human Breast_Dairkee04_681genes (15260889-SuppTable2)	14	DPM2|GTF3C4|MRPL41|MRPS2|ODF2|PAXX|PMPCA|PPP6C|PSMD5|RABL6|SSNA1|WDR5|WDR34|ZDHHC12	2.97321336393e-05	6	5.94110090569e-05	CS|EPB41L4B|NDUFA10|PA2G4|PXMP2|RPA3	14	5.32582216589e-08	BARD1|CIZ1|CKS2|CTNNAL1|HIST3H2A|MELK|PHF2|PIP5K1B|POLE3|RAD23B|SLC25A25|STOML2|TMEM38B|TPRN
Human HeadandNeck_Jarvinen06_739genes (16715129-SuppTable2)	15	AGPAT2|C9ORF16|DDX31|GTF3C4|GTF3C5|MRPS2|NDUFA8|ODF2|PMPCA|PPP6C|RABL6|RBM18|SURF1|TRUB2|URM1	0.00045052535253	6	0.000901050705059	ATP6V0E1|BNIP1|FAM220A|RPA3|TMEM141|UCP3	31	1.09788121814e-15	APTX|ATP6V1G1|AUH|BRD3|C5|CIZ1|CKS2|COQ4|CRAT|FAM120A|FXN|GOLGA1|GYG1|IARS|KYAT1|MELK|PDCL|PIP5K1B|PLGRKT|PPP1R26|PRRC2B|PUM3|RALGDS|RC3H2|SLC35D2|SMU1|SPTLC1|SYK|TJP2|TSC1|ZBTB43
Human StemCell_West07_350genes (17234769-TableS2a)	8	ARPC5L|CDK5RAP2|DOLK|GAPVD1|MED27|PSMB7|TBC1D13|TUBB4B	4.91859400193e-05	6	9.83708792117e-05	ARF3|DCTN2|EPB41L4B|ICMT|TARBP2|TMEM106C	15	1.00082692401e-09	ATP6V1G1|BARD1|BRD3|IARS|MELK|NAA35|NOL8|POLE3|RAD23B|SPTLC1|TSC1|TUBB3|TXN|XPO1|ZBTB43
LINDGREN_BLADDER_CANCER_CLUSTER_2A_DN	7	ALG2|C9ORF78|CDK5RAP2|FBXW2|PPP6C|PSMB7|PSMD5	0.000430167112218	1	0.000860334224434	RNF41	15	1.31799315918e-15	CTNNAL1|ERP44|FAM120AOS|GNG10|IARS|ISCA1|NEK6|POLE3|PRPF4|RAB14|RAD23B|RNF38|SETX|UBQLN1|ZFAND5
LINDGREN_BLADDER_CANCER_WITH_LOH_IN_CHR9Q	23	ALG2|ARPC5L|C9ORF78|CAMSAP1|CDK5RAP2|ENDOG|FAM206A|FBXW2|FKTN|GLE1|KIAA0368|NUP188|PPP6C|PSMB7|PSMD5|PTPN3|RBM18|SPOUT1|TMEM245|TOR1A|TOR1B|TRIM32|ZBTB34	1.45742657947e-25	4	2.91485315893e-25	CDK9|PTGR1|SLC2A8|ZNF79	39	1.69827408084e-80	ABL1|ANP32B|APTX|ATP6V1G1|CARNMT1|CNTRL|ERP44|FAM120AOS|FAM122A|GNG10|GOLGA1|GPR107|IARS|INIP|IPPK|ISCA1|MFSD14B|MRPL50|MTAP|NANS|NEK6|NMRK1|NUP214|POLE3|PRPF4|RAB14|RABGAP1|RAD23B|RNF38|SEC16A|SEC61B|SECISBP2|SETX|SLC35D2|SMC5|SPTLC1|STX17|TSC1|VPS13A
LOPEZ_MBD_TARGETS	16	AGPAT2|DPH7|FBXW2|GLE1|GTF3C4|MED22|MED27|MRRF|PAXX|PMPCA|PPP6C|PSMB7|SDCCAG3|SSNA1|UBAC1|URM1	5.98962326095e-06	15	1.16245178508e-05	ARL6IP4|BLVRB|CD63|DAZAP2|HOXC4|PA2G4|PCBP2|PSMD9|RPS27L|SERINC2|SLC2A8|SOGA1|SRA1|WDR45|ZNF79	22	3.54728671099e-07	ABCB6|ATP6V1G1|C5|CDC42|CDK20|COQ4|CRAT|FANCC|GNG10|IARS|IPPK|NPDC1|PKN3|PPP1CB|RALGDS|SEC16A|SEC61B|SEMA4D|TUBA4A|TUBB2B|TUBB3|USP20
MORF_PPP1CA	3	C9ORF16|PPP6C|URM1	6.78203194423e-05	8	2.75121892196e-05	ARF3|COX6A1|DCTN2|HARS2|NDUFA2|PPP1R7|PSMD9|SLC25A3	8	0.000108128449665	ANP32B|CLTA|DNPEP|FAM120A|POLE3|RAD23B|STOML2|VCP
MORF_PSMC1	4	C9ORF16|PPP6C|SSNA1|URM1	0.000149873076896	11	8.31515005627e-08	ARF3|ATOX1|ATP6V0E1|COX6A1|DCTN2|HARS2|NDUFA2|NDUFB1|PPP1R7|PSMD9|PTPA	7	0.000299663002291	ANP32B|CLTA|DNPEP|RAD23B|SPTLC1|STOML2|VCP
MORF_RAD23B	2	PPP6C|URM1	0.000521452527058	8	0.000251610283798	ARF3|ATOX1|DCTN2|HARS2|PPP1R7|PSMD9|PTPA|TMEM106C	8	0.000791294770319	C6ORF62|DNPEP|FAM120A|RAD23B|RFK|SPTLC1|STOML2|VCP
REACTOME_BIOSYNTHESIS_OF_THE_N_GLYCAN_PRECURSOR_DOLICHOL_LIPID_LINKED_OLIGOSACCHARIDE_LLO_AND_TRANSFER_TO_A_NASCENT_PROTEIN	3	ALG2|DOLK|DPM2	0.000716472501679	1	0.000510961895586	DOLPP1	1	0.000921983107772	DPM3
REACTOME_PROTEIN_FOLDING	3	FBXW2|FBXW5|TUBB4B	0.00045548084174	2	0.000712938329242	KIF13A|PFDN1	3	0.000198023354238	TUBA4A|TUBB2B|TUBB3
STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN	11	ALAD|ARPC5L|C9ORF16|DPM2|GOLGA2|MRPL41|NDUFA8|RABL6|SLC27A4|STRBP|UBAC1	2.43490487228e-07	13	1.96710871957e-07	ATOX1|BNIP1|CNPY2|COX7C|COX14|CYSTM1|HIGD2A|MRPL57|NDUFA2|PRAF2|SRA1|TMEM44|WDR45	15	2.90270102498e-07	C9ORF85|COQ4|CREB3|FAM102A|FAM120AOS|FMC1|HIST3H2A|INIP|RAD23B|SEC22B|SEC61B|SMU1|TESK1|TXN|VPS13A
WEST_ADRENOCORTICAL_TUMOR_UP	8	ARPC5L|CDK5RAP2|DOLK|GAPVD1|MED27|PSMB7|TBC1D13|TUBB4B	4.57202101863e-05	6	9.14394195456e-05	ARF3|DCTN2|EPB41L4B|ICMT|TARBP2|TMEM106C	15	1.00082692401e-09	ATP6V1G1|BARD1|BRD3|IARS|MELK|NAA35|NOL8|POLE3|RAD23B|SPTLC1|TSC1|TUBB3|TXN|XPO1|ZBTB43
chaperone mediated protein folding requiring cofactor [GoID:GO:0051085; evidenceTypes:IBA|IDA|IEA|TAS]	3	TOR1A|TOR1B|TOR2A	0.000597295824465	0	0.000462438397159		0	0.000732153251771	
chr9q31	6	ALG2|ELP1|FAM206A|FKTN|PTPN3|TMEM245	1.31963135693e-06	1	2.63926271385e-06	DNAJC25-GNG10	12	1.28096068938e-21	ANKS6|CTNNAL1|INVS|MRPL50|NIPSNAP3A|PRPF4|RAD23B|SLC31A1|STX17|TEX10|TMEM38B|TXN
chr9q32	5	ALAD|KIAA0368|MRRF|TOR1A|TRIM32	3.58646378975e-06	1	7.17292752792e-06	PTGR1	7	5.1575281916e-14	CDC26|GNG10|HSDL2|INIP|PTBP3|RAB14|ZFP37
chr9q33	11	BSPRY|CDK5RAP2|CUTALP|HDHD3|NDUFA8|RABEPK|STRBP|SURF1|SURF2|SURF6|ZBTB34	1.53729881408e-12	1	3.07459045246e-12	SLC2A8	6	7.17569170088e-18	ATP6V1G1|C5|CNTRL|NEK6|POLE3|ZBTB6
chr9q34	62	AGPAT2|ARPC5L|ASB6|C9ORF16|CAMSAP1|CDK5RAP2|DDX31|DENND1A|DOLK|DPH7|DPM2|EDF1|ENDOG|EXOSC2|FBXW2|FBXW5|FPGS|GAPVD1|GLE1|GOLGA2|GTF3C4|GTF3C5|INPP5E|MAN1B1|MAPKAP1|MED22|MED27|MIR600HG|MRPL41|MRPS2|NELFB|NUP188|ODF2|PAXX|PHPT1|PMPCA|POMT1|PPP6C|PSMB7|PSMD5|PTGES2|RABL6|RBM18|REXO4|SDCCAG3|SLC27A4|SNAPC4|SPOUT1|SSNA1|SWI5|TBC1D13|TMEM203|TOR1B|TOR2A|TRAF2|TRUB2|UBAC1|URM1|WDR5|WDR34|ZDHHC12|ZMYND19	5.92717109775e-85	10	1.18543421955e-84	CDK9|DOLPP1|IER5L|MIGA2|MVB12B|NDOR1|PTPA|TMEM141|ZBTB26|ZNF79	39	7.63360164855e-129	ABCA2|ABL1|ANAPC2|ARRDC1|BRD3|BRD3OS|CIZ1|COQ4|CRAT|EHMT1|FAM102A|FAM129B|GOLGA1|GPR107|KYAT1|NCBP1|NPDC1|NSMF|NUP214|PKN3|PPP1R26|PRRC2B|PTRH1|QSOX2|RABGAP1|RALGDS|RC3H2|SAPCD2|SEC16A|SETX|SH3GLB2|SLC25A25|SLC25A25-AS1|TMEM250|TOR4A|TSC1|TTF1|UAP1L1|USP20
mannosylation [GoID:GO:0097502; evidenceTypes:IBA|IDA|IEA|IMP|ISS|TAS]	4	ALG2|DPM2|FKTN|POMT1	0.000451449190693	0	0.000784428346279		1	0.000118470035107	DPM3
protein O-linked mannosylation [GoID:GO:0035269; evidenceTypes:IDA|IEA|IMP|ISS|TAS]	3	DPM2|FKTN|POMT1	0.000530109420498	0	0.000987676826051		1	7.2542014945e-05	DPM3
